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1

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

Langille, Morgan G I, Zaneveld, Jesse, Caporaso, J Gregory, McDonald, Daniel, Knights, Dan, Reyes, Joshua A, Clemente, Jose C, Burkepile, Deron E, Vega Thurber, Rebecca L, Knight, Rob, Beiko, Robert G

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

2

Polyphenol-based prebiotics and synbiotics: Potential for cancer chemoprevention

Thilakarathna, W.P.D. Wass, Langille, Morgan G.I., Rupasinghe, H.P. Vasantha

Journal:

Current Opinion in Food Science

Year:

2018

Language:

english

File:

PDF, 360 KB

english, 2018

3

Dissecting Community Structure in Wild Blueberry Root and Soil Microbiome

Yurgel, Svetlana N., Douglas, Gavin M., Dusault, Ashley, Percival, David, Langille, Morgan G. I.

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.03 MB

english, 2018

4

Detecting genomic islands using bioinformatics approaches

Langille, Morgan G. I., Hsiao, William W. L., Brinkman, Fiona S. L.

Journal:

Nature Reviews Microbiology

Year:

2010

Language:

english

File:

PDF, 409 KB

english, 2010

5

Static Facial Slings

Langille, Morgan, Singh, Prabhjyot

Journal:

Facial Plastic Surgery Clinics of North America

Year:

2016

Language:

english

File:

PDF, 1.23 MB

english, 2016

6

Genomic Analysis of a Serotype 5 Streptococcus pneumoniae Outbreak in British Columbia, Canada, 2005–2009

Miller, Ruth R., Langille, Morgan G. I., Montoya, Vincent, Crisan, Anamaria, Stefanovic, Aleksandra, Martin, Irene, Hoang, Linda, Patrick, David M., Romney, Marc, Tyrrell, Gregory, Jones, Steven J. M.

Journal:

Canadian Journal of Infectious Diseases and Medical Microbiology

Year:

2016

Language:

english

File:

PDF, 1.30 MB

english, 2016

7

Food or just a free ride? A meta-analysis reveals the global diversity of the Plastisphere

Wright, Robyn J., Langille, Morgan G. I., Walker, Tony R.

Journal:

The ISME Journal

Year:

2020

File:

PDF, 7.20 MB

2020

8

Human Microbiome: A Genetic Bazaar for Microbes?

Morgan G.I. Langille, Conor J. Meehan, Robert G. Beiko

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 428 KB

english, 2012

9

Evaluation of genomic island predictors using a comparative genomics approach

Morgan GI Langille, William WL Hsiao, Fiona SL Brinkman

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 507 KB

english, 2008

10

Effect of conjugated linoleic acid isomers on lipoproteins and atherosclerosis in the Syrian Golden hamster

Patricia L. Mitchell, Morgan A. Langille, Deborah L. Currie, Roger S. McLeod

Journal:

Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids

Year:

2005

Language:

english

File:

PDF, 266 KB

english, 2005

11

Partitioning of polycyclic aromatic hydrocarbons between water and particles compared to bioaccumulation in mussels: a harbour case

Jocelyne Hellou, Sean Steller, Jim Leonard, Morgan A. Langille, Diane Tremblay

Journal:

Marine Environmental Research

Year:

2005

Language:

english

File:

PDF, 346 KB

english, 2005

12

Parent genes of retrotransposition-generated gene duplicates in Drosophila melanogaster have distinct expression profiles

Morgan G.I. Langille, Denise V. Clark

Journal:

Year:

2007

Language:

english

File:

PDF, 729 KB

english, 2007

13

Total glossectomy with laryngeal preservation and free flap reconstruction: Objective functional outcomes and systematic review of the literature

Peter T. Dziegielewski, Michael L. Ho, Jana Rieger, Prabhjyot Singh, Morgan Langille, Jeffrey R. Harris, Hadi Seikaly

Journal:

The Laryngoscope

Year:

2012

Language:

english

File:

PDF, 112 KB

english, 2012

14

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource

Thomas J Sharpton, Guillaume Jospin, Dongying Wu, Morgan GI Langille, Katherine S Pollard, Jonathan A Eisen

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 611 KB

english, 2012

15

Interactions in the microbiome: communities of organisms and communities of genes

Boon, Eva, Meehan, Conor J., Whidden, Chris, Wong, Dennis H.-J., Langille, Morgan G.I., Beiko, Robert G.

Journal:

FEMS Microbiology Reviews

Year:

2014

Language:

english

File:

PDF, 588 KB

english, 2014

16

Data Standards for Flow Cytometry

Spidlen, Josef, Gentleman, Robert C., Haaland, Perry D., Langille, Morgan, Meur, Nolwenn Le, Ochs, Michael F., Schmitt, Charles, Smith, Clayton A., Treister, Adam S., Brinkman, Ryan R.

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 298 KB

english, 2006

17

Systematic Review of the Quality of Patient Information on the Internet Regarding Inflammatory Bowel Disease Treatments

Langille, Morgan, Bernard, André, Rodgers, Chris, Hughes, Stephanie, Leddin, Des, van Zanten, Sander Veldhuyzen

Journal:

Clinical Gastroenterology and Hepatology

Year:

2010

Language:

english

File:

PDF, 814 KB

english, 2010

18

Which is more important for classifying microbial communities: who’s there or what they can do?

Xu, Zhenjiang, Malmer, Daniel, Langille, Morgan G I, Way, Samuel F, Knight, Rob

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 469 KB

english, 2014

19

Intravenous tranexamic acid and intraoperative visualization during functional endoscopic sinus surgery: a double-blind randomized controlled trial

Langille, Morgan A., Chiarella, Angelo, Côté, David W.J., Mulholland, Graeme, Sowerby, Leigh J., Dziegielewski, Peter T., Wright, Erin D.

Journal:

International Forum of Allergy & Rhinology

Year:

2013

Language:

english

File:

PDF, 196 KB

english, 2013

20

A Systematic Review of Patient Inflammatory Bowel Disease Information Resources on the World Wide Web

Bernard, André, Langille, Morgan, Hughes, Stephanie, Rose, Caren, Leddin, Desmond, Veldhuyzen van Zanten, Sander

Journal:

American Journal of Gastroenterology

Year:

2007

Language:

english

File:

PDF, 117 KB

english, 2007

21

Microbial shifts in the aging mouse gut

Langille, Morgan, Meehan, Conor J, Koenig, Jeremy E, Dhanani, Akhilesh S, Rose, Robert A, Howlett, Susan E, Beiko, Robert G

Journal:

Year:

2014

Language:

english

File:

PDF, 784 KB

english, 2014

22

169 Assessment of Community Structure and Predictive Functional Profiling of the Mucosa-Associated Microbiome Implicates Alterations in Benzoate Metabolism in ‘de novo’ IBD After Pouch-Surgery and in Treatment-Naïve Pediatric IBD

Connors, Jessica, Hansen, Richard, Dunn, Katherine A., Langille, Morgan G., Russell, Richard K., Otley, Anthony R., MacIntyre, Bradley, El-Omar, Emad, Bielawski, Joseph P., Hold, Georgina L., Van Limb

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 653 KB

english, 2015

23

GenomeD3Plot: a library for rich, interactive visualizations of genomic data in web applications: Fig. 1.

Laird, Matthew R., Langille, Morgan G.I., Brinkman, Fiona S.L.

Journal:

Year:

2015

Language:

english

File:

PDF, 4.20 MB

english, 2015

24

IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis: Figure 1.

Dhillon, Bhavjinder K., Laird, Matthew R., Shay, Julie A., Winsor, Geoffrey L., Lo, Raymond, Nizam, Fazmin, Pereira, Sheldon K., Waglechner, Nicholas, McArthur, Andrew G., Langille, Morgan G.I., Brink

Journal:

Nucleic Acids Research

Year:

2015

Language:

english

File:

PDF, 998 KB

english, 2015

25

Cord blood vitamin D status and neonatal outcomes in a birth cohort in Quebec, Canada

Morgan, Catherine, Dodds, Linda, Langille, Donald B., Weiler, Hope A., Armson, B. Anthony, Forest, Jean-Claude, Giguère, Yves, Woolcott, Christy G.

Journal:

Archives of Gynecology and Obstetrics

Year:

2016

Language:

english

File:

PDF, 404 KB

english, 2016

26

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 12 February 2005)] Medical Imaging 2005: Image Processing - Color lesion boundary detection using live wire

Chodorowski, Artur, Fitzpatrick, J. Michael, Reinhardt, Joseph M., Mattsson, Ulf, Langille, Morgan, Hamarneh, Ghassan

Year:

2005

Language:

english

File:

PDF, 258 KB

english, 2005

27

Frontal sinus cells: Identification, prevalence, and association with frontal sinus mucosal thickening

Langille, Morgan

Journal:

American Journal of Rhinology and Allergy

Year:

2012

Language:

english

File:

PDF, 59 KB

english, 2012

28

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies

Chase, John H., Bolyen, Evan, Rideout, Jai Ram, Caporaso, J. Gregory, Langille, Morgan

Journal:

Year:

2016

Language:

english

File:

PDF, 1.18 MB

english, 2016

29

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 12 February 2005)] Medical Imaging 2005: Image Processing - 3D live-wire-based semi-automatic segmentation of medical images

Hamarneh, Ghassan, Fitzpatrick, J. Michael, Reinhardt, Joseph M., Yang, Johnson, McIntosh, Chris, Langille, Morgan

Year:

2005

Language:

english

File:

PDF, 3.02 MB

english, 2005

30

Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research

Comeau, André M., Douglas, Gavin M., Langille, Morgan G. I., Eisen, Jonathan

Journal:

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

31

PaperBLAST: Text Mining Papers for Information about Homologs

Price, Morgan N., Arkin, Adam P., Langille, Morgan G. I.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.29 MB

english, 2017

32

Linking Spatial Structure and Community-Level Biotic Interactions through Cooccurrence and Time Series Modeling of the Human Intestinal Microbiota

de Muinck, Eric J., Lundin, Knut E. A., Trosvik, Pål, Langille, Morgan G. I.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.94 MB

english, 2017

33

The Induction of Oxalate Metabolism In Vivo Is More Effective with Functional Microbial Communities than with Functional Microbial Species

Miller, Aaron W., Dale, Colin, Dearing, M. Denise, Langille, Morgan G. I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.49 MB

english, 2017

34

The coupling of taxonomy and function in microbiomes

Inkpen, S. Andrew, Douglas, Gavin M., Brunet, T. D. P., Leuschen, Karl, Doolittle, W. Ford, Langille, Morgan G. I.

Journal:

Biology & Philosophy

Year:

2017

Language:

english

File:

PDF, 539 KB

english, 2017

35

Variation in Bacterial and Eukaryotic Communities Associated with Natural and Managed Wild Blueberry Habitats

Yurgel, Svetlana N., Douglas, Gavin M., Comeau, André M., Mammoliti, Melissa, Dusault, Ashley, Percival, David, Langille, Morgan G. I.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

36

Moderate Exercise Has Limited but Distinguishable Effects on the Mouse Microbiome

Lamoureux, Emily V., Grandy, Scott A., Langille, Morgan G. I., Lozupone, Catherine

Journal:

Year:

2017

Language:

english

File:

PDF, 1.18 MB

english, 2017

37

Exploring Linkages between Taxonomic and Functional Profiles of the Human Microbiome

Langille, Morgan G. I.

Journal:

Year:

2018

Language:

english

File:

PDF, 158 KB

english, 2018

38

“Available upon request”: not good enough for microbiome data!

Langille, Morgan G. I., Ravel, Jacques, Fricke, W. Florian

Journal:

Year:

2018

Language:

english

File:

PDF, 297 KB

english, 2018

39

The Association of Virulence Factors with Genomic Islands

Ho Sui, Shannan J., Fedynak, Amber, Hsiao, William W. L., Langille, Morgan G. I., Brinkman, Fiona S. L., Ahmed, Niyaz

Journal:

Year:

2009

Language:

english

File:

PDF, 213 KB

english, 2009

40

BioTorrents: A File Sharing Service for Scientific Data

Langille, Morgan G. I., Eisen, Jonathan A., Stajich, Jason E.

Journal:

Year:

2010

Language:

english

File:

PDF, 857 KB

english, 2010

41

Functional Biogeography of Ocean Microbes Revealed through Non-Negative Matrix Factorization

Jiang, Xingpeng, Langille, Morgan G. I., Neches, Russell Y., Elliot, Marie, Levin, Simon A., Eisen, Jonathan A., Weitz, Joshua S., Dushoff, Jonathan, Horn, Matthias

Journal:

Year:

2012

Language:

english

File:

PDF, 605 KB

english, 2012

42

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

Parks, Donovan H., Mankowski, Timothy, Zangooei, Somayyeh, Porter, Michael S., Armanini, David G., Baird, Donald J., Langille, Morgan G. I., Beiko, Robert G., Gilbert, Jack Anthony

Journal:

Year:

2013

Language:

english

File:

PDF, 5.44 MB

english, 2013

43

Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals

Finlayson-Trick, Emma C. L., Getz, Landon J., Slaine, Patrick D., Thornbury, Mackenzie, Lamoureux, Emily, Cook, Jamie, Langille, Morgan G. I., Murray, Lois E., McCormick, Craig, Rohde, John R., Cheng,

Journal:

Year:

2017

Language:

english

File:

PDF, 3.57 MB

english, 2017

44

Correcting for batch effects in case-control microbiome studies

Gibbons, Sean M., Duvallet, Claire, Alm, Eric J., Langille, Morgan

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 25.56 MB

english, 2018

45

Conjugated linoleic acids, atherosclerosis, and hepatic very-low-density lipoprotein metabolism

McLeod, Roger S, LeBlanc, Andrea M, Langille, Morgan A, Mitchell, Patricia L, Currie, Deborah L

Journal:

American Journal of Clinical Nutrition

Year:

2004

Language:

english

File:

PDF, 51 KB

english, 2004

46

Differences in adiposity and diet quality among individuals with inflammatory bowel disease in Eastern Canada

DeClercq, Vanessa, Langille, Morgan G. I., Van Limbergen, Johan, Liu, Gang

Journal:

Year:

2018

Language:

english

File:

PDF, 803 KB

english, 2018

47

An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment

San Roman, Magdalena, Wagner, Andreas, Langille, Morgan

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 4.37 MB

english, 2018

48

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization

Bradley, Patrick H., Nayfach, Stephen, Pollard, Katherine S., Langille, Morgan

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 6.42 MB

english, 2018

49

Selective sensitivity of the gut microbiome to iron chelators in polybacterial abdominal sepsis

Dickson, Kayle, Liu, Simo, Zhou, Juan, Langille, Morgan, Holbein, Bruce E., Lehmann, Christian

Journal:

Medical Hypotheses

Year:

2018

Language:

english

File:

PDF, 473 KB

english, 2018

50

The phosphate binder ferric citrate alters the gut microbiome in rats with chronic kidney disease

Lau, Wei Ling, Vaziri, Nosratola D, Nunes, Ane CF, Comeau, Andre M, Langille, Morgan GI, England, Whitney, Khazaeli, Mahyar, Suematsu, Yasunori, Phan, Joann, Whiteson, Katrine

Journal:

Journal of Pharmacology and Experimental Therapeutics

Year:

2018

Language:

english

File:

PDF, 1.36 MB

english, 2018